What is DNA | Discover, Type, Structure, DNA replication

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What is DNA and where is DNA located?

DNA is a Genetic material and it is found in the cells of Living organisms except for plant viruses and a few animal viruses Where form the genetic material in Eukaryotic cells. DNA occurs in the nucleus and together with protein forms chromatin. traces of DNA are found in mitochondria and chloroplast.

What is the Full form of DNA?

DNA – Deoxyribonucleic acid.

Who Discovered DNA?

Swiss chemist named Johann Friedrich Miescher in 1869 First time identifies DNA.

What is the structure of DNA or Morphology?

 In Eukaryotic cells, DNA occurs in the form of long spirally twisted unbranched thread. in mitochondria and plastids of Eukaryotic cells and in prokaryotic cells DNA is circular.

Deoxyribose molecule and phosphoric acid molecule, what is DNA
Deoxyribose molecule and phosphoric acid molecule

What is the chemical composition of DNA?

 Composed of three types of compounds:

  1.  Sugar –  It is a pentose sugar the deoxyribose.
  2.  phosphoric acid
  3.  Nitrogenous bases – 

Nitrogenous bases – 

These are nitrogen-containing organic ring compounds. these are four types And are known as (A) adenine (B) thymine (C) cytosine (D) guanine. These four nitrogenous bases are of two different types:

Purines and Pyrimidines

What are purines bases?

 Purines –

Adenine and guanine are two purines found in DNA. represented by the letters A and G. These are two-ringed nitrogen compounds.  

What are pyrimidines?

Pyrimidines –

Cytosine and thymine are the Pyrimidines. these are formed of one ring only. these are represented by the letters capital C and T.

Structural formulae of Adenine Guanine Cytosine Thymine, what is DNA
Structural formulae of Adenine Guanine Cytocine Thymine

What is the molar ratio of nitrogenous bases in DNA?

Chemical analysis reveals three fundamental features of DNA.

Composition of a nucleotide, what is DNA
Composition of a nucleotide

(a) Regardless of the source, the parent remittance components occur in equal amounts in all DNA molecules i.e.

A + G = C + T

(b) The amount of adenine (A) is equivalent to the amount of thymine (T)  and  of cytosine (C) Is equivalent to that of guanine (G) i.e.

A = T and G = C

(c) The base ratio A = T/G = C may vary in the DNA of different groups of animals but is constant for a particular species. Therefore, this ratio has been used to identify the DNA from a particular source.

Molecular structure of DNA

DNA  is a macromolecule. Its nitrogenous base on joining with deoxyribose to form nucleosides and with the deoxyribose and phosphoric acid to form nucleotides.

Phosphodiester bond between two nucleotides, what is DNA
Phosphodiester bond between two nucleotides
  1. Nucleosides –

A nitrogenous base with a Molecule of deoxyribose (without phosphate group)  is known as a nucleoside. In a nucleoside, the first carbon atom of deoxyribose is linked to the first nitrogen (in pyrimidines) or the 9th nitrogen (in purines). Thus, there are nucleosides in a DNA  molecule. These are: 

Adenosine – Adenine + Deoxyribose

Guanosine – Guanine + Deoxyribose

Cytidine – Cytosine + Deoxyribose

Thymidine – Thymine + Deoxyribose

  1. Nucleotides –

A nucleotide is formed of one molecule of deoxyribose one molecule of phosphoric acid and one of the four nitrogenous bases. The phosphoric acid molecule is attached to the 5th Carbon atom of the deoxyribose ring. since there are four nitrogenous bases there are four types of nucleotides namely.

Deoxyadenylic acid – Adenine + Deoxyribose + Phosphoric acid.

Deoxyguanylic acid – Guanine + Deoxyribose + Phosphoric acid.

Deoxycytidylic acid – Cytosine + Deoxyribose + Phosphoric acid.

Deoxythymidylic Acid – Thymine + Deoxyribose + Phosphoric acid.

  1. Polynucleotide chain –

DNA is a macromolecule with very high molecular weight. its monomers are nucleotides. These are linked in a specific fashion forming a polynucleotide chain.

In a polynucleotide chain, the adjacent nucleotides are connected Together by a Phosphodiester bond between the phosphate molecule of one nucleotide and the third carbon atom of the sugar molecule of the other nucleotides.

This form is the sugar-phosphate chain. the nitrogenous base is attached to the first carbon atom of deoxyribose and is directed at 8 at right angles to the long axis of the polynucleotide chain.

One end of the polynucleotide  Chain has sugar Residue with C-3 not linked to another uh nucleotide and the other end with sugar Residue C-5  not linked to another nucleotide. these are named 3’ and 5’ ends respectively.

Watson and Crick’s model of DNA

In 1953, D.S. Watson and F.H.C. Crick present a working Model of DNA. The Watson and Crick model of DNA is illustrative of its chemical nature and the mechanism by which it duplicates itself.

 Watson and Crick suggested that in a DNA molecule there are two such polynucleotide change arranged and two parallel are in the opposite direction so that 3 end of one lies beside the end of the other. the adjacent nucleotides of each chain are joined through phosphodiester bonds.

A Polinucleotide chain, what is DNA
A Polinucleotide chain

In such a structure the phosphate group of nucleotides in each chain Rs trend lies on the outer side of deoxyribose. The two chains are linked through hydrogen bonds formed Between oxygen and nitrogen atoms of adjacent nitrogen as bases. the unique feature of pairing between bases is : 

  1. Purines (adenine and guanine) Pair with Pyrimidines (cytosine and thymine) and
  2. Adenine pairs with thymine and guanine pairs with cytosine. 

DNA consists of two complementary chains twisted around each other. one turn of The Helix measures about 34  angstroms. it contains 10 paired nucleotides placed at regular intervals of 3.4 angstroms.

The diameter of The Helix is roughly 20 angstroms. a narrow helical groove and a wide helical groove are the space between successive turns when the pair is wound into a helix.

Structural of DNA molecule Watson and crick model, what is DNA, what is DNA
Structural of DNA molecule Watson and crick model,

What is the role of DNA in Heredity?

  1.  DNA is the chemical basis of heredity. its significance is heredity as follows:
  2.  DNA replicates itself accurately.
  3.  DNA can have a sufficiently stable structure and is least liable to mutations or heritable changes.
  4.  DNA  has the potential to carry all kinds of necessary biological information.
  5.  DNA is capable of transmitting or translating this information to the cell. inside the cell-specific protein are synthesized which control the expression of a character.

How many forms of DNA? or

How many types of DNA?

Describe the molecular structure of different forms of DNA.

Under different conditions of isolation purification and crystallization, 6 different forms of DNA double helix have been identified. some of these forms are interconvertible. the difference in this DNA formed are based on:

  • The number of base pairs present in each turn of the DNA helix.
  •  the pitch or angle between each base pair.
  •  the helical diameter of the DNA molecules.
  •  the right or left-handedness of the double helix.
B and Z types of DNA, what is DNA
B and Z types of DNA
  1. B DNA (right-handed DNA)
  2. A-DNA (Right – handed DNA)
  3. C-DNA (Right-handed)
  4. D-DNA
  5. E-DNA
  6. Z-DNA (Left-handed DNA)
  1. B DNA (right-handed DNA) –

This form of DNA occurs in all living begins under normal conditions, i.e. under low salt concentration and a high degree of hydration.

Each coil or turn measures 34 Angstroms or 3.4 nm. Each turn has 10 base pairs (bp) and each base pair occupies 3.4 Angstroms. Its two strands or polynucleotide chains are wounded in right-handed turns.

  1. A-DNA (Right – handed DNA)

A- DNA is the dehydrated form of DNA. It occurs under conditions of decreased hydration and increased concentration of Na. Like B-DNA, it also has a right-handed configuration, but A-DNA is more compact and bulky. It has 11 base pairs per turn of the helix and a diameter of 23 Angstroms.

The orientation of bases is also different. These are tilted and displaced laterally in relation to the axis of the helix. The appearance of major and minor grooves is also modified in comparison to B-DNA.

It is presumed that A-DNA is formed physiologically as a result of interaction with the hydrophobic molecules in changing cellular conditions.

  1. C-DNA (Right-handed)

C-DNA is also right-handed DNA. It occurs under even greater dehydration conditions than A and B-DNA. It has only 93 base pairs per turn of the helix and is only 19 Angstroms in diameter.

It means C-DNA is less compact and narrower than the other two right-handed DNAs. Its base pairs are tilted relative to the axis of helix-like A – DNA.

  1. D-DNA and E-DNA

These two forms of DNA are also right-handed. These occur in helices that lack guanine in their base composition. These have 8 and 7.5 nucleotides per turn respectively.

  1. Z-DNA (Left-handed DNA)

Z-DNA is left-handed DNA. The phosphodiester backbone of its two polynucleotide strands follows a zig-zag course because of which this is called Z-DNA.

The helix of Z-DNA is 18 angstroms in diameter and contains 12 base pairs per turn. The major groove presents in B-DNA is nearly absent in Z-DNA. Thus Z-DNA is more compact.

Because of this compactness, the phosphate groups on opposite strands of Z-DNA are closely placed and create a greater electrostatic repulsion.

Thus Z-DNA is energetically less stable. Z DNA is formed only when purines and pyrimidines are present alternately in the polynucleotide chains.

Z – DNA was discovered by Wang and Rich in 1979. Z DNA configuration appears when DNA is brominated or methylated and it can be stabilized by high salt concentration after specific cations.

The existence of Z DNA in drosophila can be demonstrated by using antibodies that recognize and bind specifically to Z-DNA.

What is the DNA replication process?

During DNA replication the weak hydrogen bonds between nitrogenous bases of the nucleotide separate so that the two polynucleotide chains of DNA  also separate and uncoil. The chains thus separated are complimentary to one another.

Replication of DNA molecules, what is DNA
Replication of DNA molecule

Because of the specificity Of the base pairing, each nucleotide of separated chains attracts its Complementary nucleotide from the cell cytoplasm.

Once the nucleotides are attached by their hydrogen bonds to sugar radicals unite through their phosphate components, completing the formation of a new polynucleotide chain.

Thus each chain of the double helix of DNA serves as a template or model on which its complementary chain is built.

This method of DNA replication is described as a semi-conservative method because each daughter DNA molecule is a hybrid conserving One parental polynucleotide Chain and synthesizing the other one.

Enzymes for DNA synthesis –

Two enzymes are necessary for DNA synthesis 

 DNA polymerase and  polynucleotide ligase

DNA polymerase has three sites for attachment.  one of them attaches to The template DNA The second to The triphosphate nucleotide and the third one to the 3’-OH End of the DNA primer.

Thus  DNA polymerase adds triphosphate nucleotide to primer DNA from the 5’ end to the 3’ end of the polynucleotide chain. The new strands are synthesized in fragments and these fragments are then joined by the enzyme, polynucleotide ligase.

Why is DNA replication called discontinuous?

Okazaki suggested that DNA synthesis proceeds simultaneously on both strands. The 3’ – 5’ strand of DNA is called the leading strand. On this strand, the new polynucleotide strand is synthesized in one piece in a 5’ – 3’ Direction. The 5’ – 3’ strand of DNA is called the lagging strand.

Discontinuous synthesis of DNA
Discontinuous synthesis of DNA

On this strand, the new polynucleotide strand is synthesized in a 5’ – 3’ direction in the form of small isolated segments utilizing the same enzyme. These segments are known as Okazaki pieces and consist of 1000-2000 nucleotides.

These are joined together by the enzyme polynucleotide ligase, completing the formation of polynucleotide chains. The discontinuous synthesis of DNA is supported by autoradiographic experiments.

What are the Unidirectional and bidirectional replication of DNA?

J. Cairns From his experiments concluded that DNA synthesis starts at a fixed point on the chromosome and proceeds in one direction but recent experiments suggest bidirectional replication.

Levinthal and Cairns Proposed that during replication the two strands do not separate completely; instead, they start to end at one end and simultaneously the unzipped segments start attracting the respective nucleotide Pairs. 

bidirectional DNA replication
Bidirectional DNA replication

In this way, the unzipping of the original DNA strands, and the synthesis of fresh DNA strands go side by side. it means in a duplicating DNA a Y-shaped growing point must be visible.

Cairns has demonstrated Two Y- Shaped regions in the circular replicating DNA of bacteria. one of these points is known as the growing point and the other initiation Point.

What sugar is found in DNA?

Yes,  Sugar –  It is a pentose sugar the deoxyribose.

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